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2011
Basu MK, Selengut JD, Haft DH.  2011.  ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.
Lieberman MD, Taheri S, Guo H, Mirrashed F, Yahav I, Aris A, Shneiderman B.  2011.  Visual Exploration across Biomedical Databases. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 8(2):536-550.
2009
Ghodsi M, Pop M.  2009.  Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09. :83-87.
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. Nature. 459(7244):180-184.
2006
Han B, Davis LS.  2006.  Semi-Parametric Model-Based Clustering for DNA Microarray Data. Pattern Recognition, 2006. ICPR 2006. 18th International Conference on. 3:324-327.
2003
Samet H.  2003.  Depth-first k-nearest neighbor finding using the MaxNearestDist estimator. Image Analysis and Processing, 2003.Proceedings. 12th International Conference on. :486-491.
Hjaltason GR, Samet H.  2003.  Properties of embedding methods for similarity searching in metric spaces. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 25(5):530-549.
1997
Dancik V, Hannenhalli S, Muthukrishnan S.  1997.  Hardness of flip-cut problems from optical mapping [DNA molecules application]. Compression and Complexity of Sequences 1997. Proceedings. :275-284.